Zhai, Z.*, Wang, C.*, Jiang, C., Rong, Z., and Li, J.J. (2026). IntegrateRigor: annotation-free integration optimization for cell identity recovery reveals cancer-immune interface niches. bioRxiv. [ SOFTWARE ]
Liu, P., and Li, J.J. (2026). Decoding Spatial Niches in Spatial Omics: A Taxonomy and Decision Framework. SSRN.
Dong, C.Y., Cen, Y., Song, D., and Li, J.J. (2026). scDesignPop generates realistic population-scale single-cell RNA-seq for power analysis, benchmarking, and privacy protection. bioRxiv. [ RECOMB 2026 ] [ SOFTWARE ]
Jiang C., Wang, C., and Li, J.J. (2025). Nullstrap-DE: A General Framework for Calibrating FDR and Preserving Power in DE Methods, with Applications to DESeq2 and edgeR. arXiv. [ RECOMB 2026 ]
Wang, C., Zhang, Z., and Li, J.J. (2025). Nullstrap: A Simple, High-Power, and Fast Framework for FDR Control in Variable Selection for Diverse High-Dimensional Models. arXiv.
Wang, Q., Zhai, Z., Lian, Q., Song, D., and Li, J.J. (2023). Categorization and analysis of 14 computational methods for estimating cell potency from single-cell RNA-seq data. arXiv.
Song, D.*, Chen, S.*, Lee, C.*, Li, K., Ge, X., and Li, J.J. (2023). Synthetic control removes spurious discoveries from double dipping in single-cell and spatial transcriptomics data analyses. bioRxiv. [ RECOMB 2025 ] [ SOFTWARE ]
Li, W.V., Tong, X., and Li, J.J. (2020). Bridging cost-sensitive and Neyman-Pearson paradigms for asymmetric binary classification. arXiv. [ CODE ]