8. Li, J.J., Huang, H., Bickel, P.B., and Brenner, S.E. (2014). Comparison of D. melanogaster and C. elegans developmental stages, tissues, and cells by modENCODE RNA-seq data. Genome Research 24(7):1086-1101. [ Press release ] [ Top 10 papers selected at the 2014 RECOMB/ISCB Conference on Regulatory & Systems Genomics ]
7. Li, J.J., Bickel, P.B., and Biggin, M.D. (2014). System wide analyses have underestimated protein abundances and transcriptional importance in animals. PeerJ 2:e270. [ Press release ] [ Guest post on “Bits of DNA” blog ] [ PeerJ Picks 2015″ Collection ] [ Top Bioinformatics Papers – June 2015″ Collection ] [ Top 5 most […]
2. Li, J.J., Jiang, C.-R., Brown, B.J., Huang, H., and Bickel, P.J. (2011). Sparse linear modeling of RNA-seq data for isoform discovery and abundance estimation. Proc Natl Acad Sci. USA 108(50):19867-19872. [ SOFTWARE ]
1. MacArthur, S.*, Li, X.Y.*, Li, J.*, Brown, J.B., Chu, H.C., Zeng, L., Grondona, B.P., Hechmer, A., Simirenko, L., Keranen, S.V., Knowles, D.W., Stapleton, M., Bickel, P., Biggin, M.D., and Eisen, M.B. (2009). Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic […]